GAMBIT
latest
Installation and Setup
Tutorial
Command Line Interface
Reference database releases
Python API
K-mer signatures
Distance Metric
Database
Taxonomic Classification and Database Queries
Results export
Command Line Interface
Miscellaneous and Utility Code
Indices
GAMBIT
Python API
Edit on GitHub
Python API
K-mer signatures
gambit.seq
gambit.kmers
gambit.sigs
gambit.sigs.base
gambit.sigs.calc
gambit.sigs.hdf5
Distance Metric
gambit.metric
Database
gambit.db
gambit.db.refdb
gambit.db.models
gambit.db.sqla
Taxonomic Classification and Database Queries
gambit.classify
gambit.query
Results export
gambit.results
Command Line Interface
gambit.cli
gambit.cli.common
gambit.cli.root
gambit.cli.query
gambit.cli.signatures
gambit.cli.debug
Miscellaneous and Utility Code
gambit.util
gambit.util.misc
gambit.util.io
gambit.util.json
gambit.util.indexing
gambit.util.progress
Indices
Module Index