Installation and Setup

Install from Bioconda

The recommended way to install the tool is through the conda package manager (available here):

conda install -c bioconda gambit

Install from source

Installing from source requires the cython package as well as a C compiler be installed on your system. Clone the repository and navigate to the directory, and then run:

pip install .

Or do an editable development install with:

pip install -e .

Database files

Download files for the latest database release from the Reference database releases page and place them in a directory of your choice. The directory should not contain any other files with the same extension.