Python API

• K-mer signatures
  • gambit.seq
  • gambit.kmers
  • gambit.sigs
  • gambit.sigs.base
  • gambit.sigs.calc
  • gambit.sigs.hdf5
• Distance Metric
  • gambit.metric
• Database
  • gambit.db
  • gambit.db.refdb
  • gambit.db.models
  • gambit.db.sqla
• Taxonomic Classification and Database Queries
  • gambit.classify
  • gambit.query
• Results export
  • gambit.results
• Command Line Interface
  • gambit.cli
  • gambit.cli.common
  • gambit.cli.root
  • gambit.cli.query
  • gambit.cli.signatures
  • gambit.cli.debug
• Miscellaneous and Utility Code
  • gambit.util
  • gambit.util.misc
  • gambit.util.io
  • gambit.util.json
  • gambit.util.indexing
  • gambit.util.progress

Indices

Module Index